galaxy, for installing a Galaxy server. galaxy-tools, for automating tool installation to a Galaxy server. galaxy, for installing Galaxy's remote job execution engine, Pulsar. repos, for enabling Galaxy Project maintained apt/yum repositories. interactive-environments, for configuring Galaxy Interactive Environments.
A microbiome is the community of microorganisms that can usually be found living together in any given habitat. Microbiome research has grown substantially over the past decade in terms of the range of biomes sampled, identified taxa, and the volume of data derived from the samples.
DNA sequence data has become an indispensable tool for Molecular Biology & Evolutionary Biology. Study in these fields now require a genome sequence to work from. We call this a 'Reference Sequence.' We need to build a reference for each species. We do this by Genome Assembly. De novo Genome Assembly is the process of reconstructing the original DNA sequence from the fragment reads alone.
Heatmaps are commonly used to visualize RNA-Seq results. They are useful for visualizing the expression of genes across the samples. In this tutorial we show how the heatmap2 tool in Galaxy can be used to generate heatmaps. The heatmap2 tool uses the heatmap.2 function from the R gplots package. Here we will demonstrate how to make a heatmap of the top differentially expressed (DE) genes in an RNA-Seq experiment, similar to what is shown for the fruitfly dataset in the RNA-seq ref-based ...
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